{
  "_id": "6a1eb5dcb25058d4daadde1c",
  "Package": "binspp",
  "Type": "Package",
  "Title": "Bayesian Inference for Neyman-Scott Point Processes",
  "Version": "0.2.3",
  "Authors@R": "c(\nperson(\"Mrkvicka\", \"Tomas\", email = \"mrkvicka.toma@gmail.com\", role = \"aut\"),\nperson(\"Dvorak\",\"Jiri\", email = \"dvorak@karlin.mff.cuni.cz\", role = \"aut\"),\nperson(\"Beranek\", \"Ladislav\", email = \"beranek@jcu.cz\", role = c(\"aut\")),\nperson(\"Remes\",\"Radim\", email = \"inrem@jcu.cz\", role = c(\"aut\", \"cre\")),\nperson(\"Park\", \"Jaewoo\", email = \"jwpark88@yonsei.ac.kr\", role = \"ctb\"),\nperson(\"Lee\",\"Sujeong\", email = \"dltnwjd2304@gmail.com\", role = \"ctb\")\n)",
  "Description": "The Bayesian MCMC estimation of parameters for Thomas-type\ncluster point process with various inhomogeneities. It allows\nfor inhomogeneity in (i) distribution of parent points, (ii)\nmean number of points in a cluster, (iii) cluster spread. The\npackage also allows for the Bayesian MCMC algorithm for the\nhomogeneous generalized Thomas process. The cluster size is\nallowed to have a variance that is greater or less than the\nexpected value (cluster sizes are over or under dispersed).\nDetails are described in Dvořák, Remeš, Beránek & Mrkvička\n(2022) <arXiv: 10.48550/arXiv.2205.07946>.",
  "License": "GPL-3",
  "URL": "https://github.com/tomasmrkvicka/binspp",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "Repository": "https://tomasmrkvicka.r-universe.dev",
  "Date/Publication": "2025-12-04 00:14:45 UTC",
  "RemoteUrl": "https://github.com/tomasmrkvicka/binspp",
  "RemoteRef": "HEAD",
  "RemoteSha": "733d67c6e506bab39f8841b541150c629b716277",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-02 10:33:49 UTC",
    "User": "root"
  },
  "Author": "Mrkvicka Tomas [aut],\nDvorak Jiri [aut],\nBeranek Ladislav [aut],\nRemes Radim [aut, cre],\nPark Jaewoo [ctb],\nLee Sujeong [ctb]",
  "Maintainer": "Remes Radim <inrem@jcu.cz>",
  "MD5sum": "7b57e3e7d52dffc84f82b013676ed000",
  "_user": "tomasmrkvicka",
  "_type": "src",
  "_file": "binspp_0.2.3.tar.gz",
  "_fileid": "924990965d089ec3a1c8dd9fff74554449acea0668b61cb73ef7eb17c9580094",
  "_filesize": 1147570,
  "_sha256": "924990965d089ec3a1c8dd9fff74554449acea0668b61cb73ef7eb17c9580094",
  "_created": "2026-06-02T10:33:49.000Z",
  "_published": "2026-06-02T10:52:11.978Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79051701284,
      "time": 193,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355410710"
    },
    {
      "job": 79051701361,
      "time": 191,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355408832"
    },
    {
      "job": 79051701294,
      "time": 179,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355405345"
    },
    {
      "job": 79051701325,
      "time": 184,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355406137"
    },
    {
      "job": 79051701281,
      "time": 145,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355561779"
    },
    {
      "job": 79051701305,
      "time": 451,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355486417"
    },
    {
      "job": 79051701282,
      "time": 149,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355691342"
    },
    {
      "job": 79051701338,
      "time": 398,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355472188"
    },
    {
      "job": 79051194419,
      "time": 185,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355341117"
    },
    {
      "job": 79051701292,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355386815"
    },
    {
      "job": 79051701287,
      "time": 252,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355430455"
    },
    {
      "job": 79051701307,
      "time": 247,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355428902"
    },
    {
      "job": 79051701289,
      "time": 262,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355433890"
    }
  ],
  "_buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/tomasmrkvicka/binspp",
  "_commit": {
    "id": "733d67c6e506bab39f8841b541150c629b716277",
    "author": "radimremes <60925945+radimremes@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "v0.2.3",
    "time": 1764807285
  },
  "_maintainer": {
    "name": "Remes Radim",
    "email": "inrem@jcu.cz",
    "login": "radimremes",
    "description": "",
    "uuid": 60925945
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "VGAM",
      "role": "Imports"
    },
    {
      "package": "cluster",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "spatstat",
      "role": "Imports"
    },
    {
      "package": "spatstat.model",
      "role": "Imports"
    },
    {
      "package": "spatstat.geom",
      "role": "Imports"
    },
    {
      "package": "spatstat.random",
      "role": "Imports"
    },
    {
      "package": "fields",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "tomasmrkvicka",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-45",
      "n": 2
    },
    {
      "week": "2025-49",
      "n": 12
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "radimremes",
      "count": 151,
      "uuid": 60925945
    }
  ],
  "_userbio": {
    "uuid": 61057179,
    "type": "organization",
    "name": "tomasmrkvicka"
  },
  "_downloads": {
    "count": 236,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/binspp"
  },
  "_devurl": "https://github.com/tomasmrkvicka/binspp",
  "_searchresults": 3,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/binspp.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/tomasmrkvicka/binspp",
  "_realowner": "tomasmrkvicka",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.18",
      "date": "2022-05-27"
    },
    {
      "version": "0.1.20",
      "date": "2022-06-07"
    },
    {
      "version": "0.1.24",
      "date": "2022-10-08"
    },
    {
      "version": "0.1.26",
      "date": "2022-12-08"
    },
    {
      "version": "0.2.0",
      "date": "2025-04-24"
    },
    {
      "version": "0.2.2",
      "date": "2025-05-05"
    },
    {
      "version": "0.2.3",
      "date": "2025-12-11"
    }
  ],
  "_exports": [
    "AuxVarGen",
    "coeff",
    "estgtp",
    "estgtpr",
    "estinternsp",
    "estintp",
    "first_step",
    "pCClik2",
    "plot_conn",
    "rawMCMCoutput",
    "re_estimate",
    "rgtp",
    "rThomasInhom"
  ],
  "_datasets": [
    {
      "name": "cov_refor",
      "title": "Distance to the reforestration polygon",
      "object": "cov_refor",
      "class": [
        "im"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "cov_reserv",
      "title": "Distance to the reservoir",
      "object": "cov_reserv",
      "class": [
        "im"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "cov_slope",
      "title": "Slope of the area",
      "object": "cov_slope",
      "class": [
        "im"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "cov_tdensity",
      "title": "Trees density",
      "object": "cov_tdensity",
      "class": [
        "im"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "cov_tmi",
      "title": "Topographic moisture index",
      "object": "cov_tmi",
      "class": [
        "im"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "trees_N4",
      "title": "Spanish oak trees",
      "object": "trees_N4",
      "class": [
        "ppp"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "x_left_N4",
      "title": "Left horizontal corners for trees_N4 dataset",
      "object": "x_left_N4",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "x_right_N4",
      "title": "Right horizontal corners for trees_N4 dataset",
      "object": "x_right_N4",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "y_bottom_N4",
      "title": "Bottom vertical corners for trees_N4 dataset",
      "object": "y_bottom_N4",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "y_top_N4",
      "title": "Vertical corners for trees_N4 dataset",
      "object": "y_top_N4",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AuxVarGen",
      "title": "Generate auxiliary variable for given proposed parameters.",
      "topics": [
        "AuxVarGen"
      ]
    },
    {
      "page": "binspp",
      "title": "Bayesian inference for Neyman-Scott point processes",
      "topics": [
        "binspp"
      ]
    },
    {
      "page": "coeff",
      "title": "Calculate parameters for Birth and Death Interaction likelihood functions.",
      "topics": [
        "coeff"
      ]
    },
    {
      "page": "cov_refor",
      "title": "Distance to the reforestration polygon",
      "topics": [
        "cov_refor"
      ]
    },
    {
      "page": "cov_reserv",
      "title": "Distance to the reservoir",
      "topics": [
        "cov_reserv"
      ]
    },
    {
      "page": "cov_slope",
      "title": "Slope of the area",
      "topics": [
        "cov_slope"
      ]
    },
    {
      "page": "cov_tdensity",
      "title": "Trees density",
      "topics": [
        "cov_tdensity"
      ]
    },
    {
      "page": "cov_tmi",
      "title": "Topographic moisture index",
      "topics": [
        "cov_tmi"
      ]
    },
    {
      "page": "estgtp",
      "title": "Auxiliary function which calculates sum values Bayesian MCMC estimation of parameters of generalized Thomas process",
      "topics": [
        "estgtp"
      ]
    },
    {
      "page": "estgtpr",
      "title": "Results for Bayesian MCMC estimation of parameters of generalized Thomas process",
      "topics": [
        "estgtpr"
      ]
    },
    {
      "page": "estinternsp",
      "title": "Estimation of interaction Neyman-Scott point process using auxiliary variable algorithm into Markov chain Monte Carlo.",
      "topics": [
        "estinternsp"
      ]
    },
    {
      "page": "estintp",
      "title": "Estimation of Thomas-type cluster point process with complex inhomogeneities",
      "topics": [
        "estintp"
      ]
    },
    {
      "page": "first_step",
      "title": "Estimate the first-order inhomogeneity",
      "topics": [
        "first_step"
      ]
    },
    {
      "page": "pCClik2",
      "title": "Evaluate unnormalized likelihood for auxiliary variable",
      "topics": [
        "pCClik2"
      ]
    },
    {
      "page": "plot_conn",
      "title": "plot_conn",
      "topics": [
        "plot_conn"
      ]
    },
    {
      "page": "plot.output_estintp",
      "title": "Graphical output describing the posterior distributions",
      "topics": [
        "plot.output_estintp"
      ]
    },
    {
      "page": "print.output_estinternsp",
      "title": "Text output describing the posterior distributions",
      "topics": [
        "print.output_estinternsp"
      ]
    },
    {
      "page": "print.output_estintp",
      "title": "Text output describing the posterior distributions",
      "topics": [
        "print.output_estintp"
      ]
    },
    {
      "page": "rawMCMCoutput",
      "title": "Obtaining the raw MCMC output",
      "topics": [
        "rawMCMCoutput"
      ]
    },
    {
      "page": "re_estimate",
      "title": "Re-estimate the posterior distributions with a different burn-in or a different credibility level.",
      "topics": [
        "re_estimate"
      ]
    },
    {
      "page": "rgtp",
      "title": "Simulation of generalized Thomas process",
      "topics": [
        "rgtp"
      ]
    },
    {
      "page": "rThomasInhom",
      "title": "Simulate a realization of Thomas-type cluster point process with complex inhomogeneities",
      "topics": [
        "rThomasInhom"
      ]
    },
    {
      "page": "simulate.output_estintp",
      "title": "Simulation from the fitted model",
      "topics": [
        "simulate.output_estintp"
      ]
    },
    {
      "page": "trees_N4",
      "title": "Spanish oak trees",
      "topics": [
        "trees_N4"
      ]
    },
    {
      "page": "x_left_N4",
      "title": "Left horizontal corners for trees_N4 dataset",
      "topics": [
        "x_left_N4"
      ]
    },
    {
      "page": "x_right_N4",
      "title": "Right horizontal corners for trees_N4 dataset",
      "topics": [
        "x_right_N4"
      ]
    },
    {
      "page": "y_bottom_N4",
      "title": "Bottom vertical corners for trees_N4 dataset",
      "topics": [
        "y_bottom_N4"
      ]
    },
    {
      "page": "y_top_N4",
      "title": "Vertical corners for trees_N4 dataset",
      "topics": [
        "y_top_N4"
      ]
    }
  ],
  "_readme": "https://github.com/tomasmrkvicka/binspp/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "cluster",
    "deldir",
    "dotCall64",
    "fields",
    "goftest",
    "lattice",
    "maps",
    "Matrix",
    "mgcv",
    "mvtnorm",
    "nlme",
    "polyclip",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "rpart",
    "spam",
    "spatstat",
    "spatstat.data",
    "spatstat.explore",
    "spatstat.geom",
    "spatstat.linnet",
    "spatstat.model",
    "spatstat.random",
    "spatstat.sparse",
    "spatstat.univar",
    "spatstat.utils",
    "tensor",
    "VGAM",
    "viridisLite"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "binspp",
  "_universes": [
    "tomasmrkvicka",
    "radimremes"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:36.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "86d0e9b05bf0ccfeb856749ad8b90d0f5e1e3e8b5e458ffb9dbc4ac6fd3a1c1f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:24.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "8e3b3377f6872e9dd693d32bbc4422916a0fc22aed8f399f84db5f12340260a6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:24.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "587955cb98f365a7e7efe2c6383bf8ee68d8eb8278ef79dfee29a4f6d09dea21",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:22.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "43639f356cf123386a753111e762ca83c4950c286a1b9a228a2df446d7420d93",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.3",
      "date": "2026-06-02T10:44:22.000Z",
      "arch": "aarch64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "d0a3a4d937b77a0cbded652854a3a0dfefb77a685e7ef1916e4fc1ea5a349be4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.3",
      "date": "2026-06-02T10:38:37.000Z",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "67946facf848bde4a986211246d3fdafdfb0386fbc67a89fec1c93f306e450a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.3",
      "date": "2026-06-02T10:50:52.000Z",
      "arch": "aarch64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "2230706e7d3fca8e9406c813f7ff9c4d2f79d1d3fa958bbce8d3d6a6df242d1c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.3",
      "date": "2026-06-02T10:38:21.000Z",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "6e5040c9533b2ad59205e8dc2f1f2afbeaedcbf4eb36146c6f76a729c3a83816",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:26.000Z",
      "arch": "emscripten",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "aa1effec0057ac29516336f997fcff174dc9f24989cbb2cb15b975c752fd54a5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.3",
      "date": "2026-06-02T10:35:59.000Z",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "508f54e9ca8f40a5657c7e486728f8899abd29a34f384c7bacd612164810baba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:24.000Z",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "8ec3c84c69710e7ef99ecae69d32178bd5e4c14f0dc96d377eead93dd72ab348",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.3",
      "date": "2026-06-02T10:36:34.000Z",
      "arch": "x86_64",
      "commit": "733d67c6e506bab39f8841b541150c629b716277",
      "fileid": "0f403451181d40f549e4c4b1ae6d088e6ce1ad48b7ea9a70b9237a7cd84f3195",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tomasmrkvicka/actions/runs/26814040415"
    }
  ]
}